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How many voucher species from that list have had TrnL run
How many have a "good" TrnL read
How many species on the complete species list do we find being identified in the poop samples that we do not have vouchers for (i.e. they are identified at the species level in the sequence reads file)
How many species from our complete list have a TrnL sequence in the OTU-Taxon linker file but the sequence is identical to other species?
For species with a OTUID that is shared with other species in the OTU-Taxon Linker, is there only one species from our site in that group? (i.e. do we feel like we could assign that OTU to one of our species as a flagged low-quality DNA sequence)?
How many voucher species from that list have had TrnL run
How many have a "good" TrnL read
How many species on the complete species list do we find being identified in the poop samples that we do not have vouchers for (i.e. they are identified at the species level in the sequence reads file)
How many species from our complete list have a TrnL sequence in the OTU-Taxon linker file but the sequence is identical to other species?
For species with a OTUID that is shared with other species in the OTU-Taxon Linker, is there only one species from our site in that group? (i.e. do we feel like we could assign that OTU to one of our species as a flagged low-quality DNA sequence)?