Merge image drift correction into main#2
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Move drift estimation into autoemx/utils, wire it through the refactored em_runtime and analyser acquisition flow using img_shift_tracking, and add scikit-image plus drift correction tests for PR #2. Co-authored-by: Cursor <cursoragent@cursor.com>
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Move drift estimation into autoemx/utils, wire it through the refactored em_runtime and analyser acquisition flow using img_shift_tracking, and add scikit-image plus drift correction tests for PR #2. Co-authored-by: Cursor <cursoragent@cursor.com>
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Keep drift estimation and correction entirely within em_runtime. The analyser calls acquire and save_frame_image as before; EM_Controller applies img_shift_tracking internally and defaults annotated saves to the reference image. Co-authored-by: Cursor <cursoragent@cursor.com>
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Summary
image_shift_correctionintomaindrift_correctionutility and integrates it into EM controller logicNotes
mainbefore theautoemxsp->autoemxrefactor, so merge conflicts are expected and will need manual resolution in the newautoemx/layoutTest plan
mainautoemx/module paths if neededtests/Test_Drift_Correction.py