Search results

Bundled Java runtime in BEAST 2.7.x releases has known vulnerabilities

Status: Open.

#1215 In CompEvol/beast2;

· berkleycam opened on Jun 16, 2026

EpochFlexOperator causes infinite loop/livelock when applied to 2-trees

Status: Open.

#1214 In CompEvol/beast2;

· dpascall opened on May 24, 2026

AppLauncher should remain in headless mode when running from CLI with arguments

Status: Open.

#1212 In CompEvol/beast2;

· rbouckaert opened on Mar 24, 2026

State.robustlyCalcPosterior calls store() as a side effect

Status: Open.

#1211 In CompEvol/beast2;

· alexeid opened on Mar 6, 2026

java.lang.NullPointerException: Cannot invoke "Object.getClass()" because "<local3>" is null

Status: Open.

#1208 In CompEvol/beast2;

· genesandbones opened on Nov 9, 2025

Running BEAST from command line fails when arguments contain spaces

Status: Open.

#1205 In CompEvol/beast2;

· jugne opened on Sep 9, 2025

Add tree annotator settings to output as comments

Status: Open.

#1204 In CompEvol/beast2;

· SimonGreenhill opened on Aug 15, 2025

Exception in thread "main" java.lang.NullPointerException: Cannot invoke "java.net.URL.openConnection()" because "<local8>" is null

Status: Open.

#1197 In CompEvol/beast2;

· Gipsy-The-Sheller opened on May 31, 2025

Use Function in all inputs of SiteModel

enhancement

Status: Open.

#1196 In CompEvol/beast2;

· walterxie opened on May 22, 2025

BEAUti Tip Date panel does not show Nexus configuration

BEAUti

defect

Status: Open.

#1194 In CompEvol/beast2;

· walterxie opened on May 18, 2025

Restrict the location of clade MRCAs

Status: Open.

#1193 In CompEvol/beast2;

· sbenvari opened on May 15, 2025

generalise Dirichlet Distribution to deal with vectors that do not sum to 1

Status: Open.

#1190 In CompEvol/beast2;

· EvaLiyt opened on May 8, 2025