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Add superseded_calibration in Calibration. Modified related functions and tests.#769

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EstelleDa wants to merge 4 commits into
release-2026.3.0from
feature/estelle/721/supersedingCalibration
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Add superseded_calibration in Calibration. Modified related functions and tests.#769
EstelleDa wants to merge 4 commits into
release-2026.3.0from
feature/estelle/721/supersedingCalibration

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@EstelleDa EstelleDa linked an issue Jun 15, 2026 that may be closed by this pull request
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coveralls commented Jun 16, 2026

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Coverage Report for CI Build 28008435262

Coverage decreased (-0.2%) to 89.006%

Details

  • Coverage decreased (-0.2%) from the base build.
  • Patch coverage: 6 uncovered changes across 2 files (42 of 48 lines covered, 87.5%).
  • 25 coverage regressions across 4 files.

Uncovered Changes

File Changed Covered %
src/mavedb/view_models/score_calibration.py 13 9 69.23%
src/mavedb/lib/score_calibrations.py 20 18 90.0%
Total (5 files) 48 42 87.5%

Coverage Regressions

25 previously-covered lines in 4 files lost coverage.

File Lines Losing Coverage Coverage
src/mavedb/lib/utils.py 11 28.13%
src/mavedb/lib/clinvar/utils.py 6 90.59%
src/mavedb/worker/jobs/external_services/clinvar.py 5 94.95%
src/mavedb/lib/vep.py 3 87.76%

Coverage Stats

Coverage Status
Relevant Lines: 14299
Covered Lines: 12727
Line Coverage: 89.01%
Coverage Strength: 0.89 hits per line

💛 - Coveralls

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Successfully merging this pull request may close these issues.

Allow Deprecation of Calibrations via Superseding

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